The Lesser-Known Treasures of Malta: 15 Hidden Gems to Discover

Malta is one of those places that feels like it’s been plucked straight out of a postcard, but let’s be real—there’s so much more to this island than just the usual tourist spots. Sure, the Blue Lagoon and St. John’s Co-Cathedral are gorgeous, but I’m all about those hidden gems that only the locals really know about. You know, the secret beaches, the quiet caves, the off-the-radar temples—those are the spots that truly make Malta unforgettable.

In this guide, I’m sharing my top 15 lesser-known treasures in Malta and Gozo. Whether you’re into exploring dramatic coastlines, soaking in ancient history, or finding your next Instagram-worthy hidden corner, there’s something here for every type of adventurer. Trust me, these places are the real magic of Malta, and I can’t wait for you to discover them!

N°1. Dwejra Inland Sea

The Dwejra Inland Sea is a tranquil, saltwater lagoon tucked away on Gozo’s western coast. It’s linked to the open sea via a narrow natural tunnel carved through the cliff. While the famed Azure Window collapsed in 2017, the surrounding area remains breathtaking, complete with boathouses sporting colorful doors and limestone cliffs. Why it’s a hidden gem? Fewer crowds than the Blue Lagoon and a dream for divers and photographers.

N°2. Xwejni Salt Pans

On the north coast of Gozo, near Marsalforn, you can find the Xwejni Salt Pans. Those squared, rock-cut salt pans stretch about 3 km along the coast create this wonderful hidden gem in Malta. Already there during the Phoenician and Roman times, they are actually still in use today! Scraping the crystals of salt is a tradition that has been passed down for many generations. An activity you can even witness if you come during the summertime. Oh and as a bonus; the sea in a backdrop makes for a gorgeous view!

N° 3. The Rotunda of Mosta

The Rotunda of Mosta (Basilica of the Assumption of Our Lady) is one of Malta’s architectural marvels, inspired by Rome’s Pantheon. Located in Mosta, it features one of Europe’s largest unsupported domes. The church is famous for surviving a WWII bombing on April 9, 1942, when a German bomb pierced the dome during Mass but failed to explode. This event, known as “The Miracle of Mosta,” spared the lives of over 300 people. A replica of the bomb is now displayed inside the church as a reminder of this miraculous moment.

N°4. Coral Lagoon in Il-Mellieħa

The Coral Lagoon is a hidden cave located in Il-Mellieħa, next to the Little Armier Bay. It is a very popular diver’s spot due to its crystal clear waters. From Little Armier Bay, you can get there by kayak or by foot and swim in this unusual, true beauty of nature! A lot of people are jumping off the top of the cave but be careful because the rocks surrounding lagoon are pretty harsh and might cut you. It is better to walk around with sneakers or water shoes. Definitely a true hidden gem in Malta!

N°5. In-Niffied Sea Caves

In-Niffied sea caves are located on the Qrendi coastline, not far from Ħaġar Qim. One of the cave has the gorgeous opening on the sea that you can see in the photo below which is one of the most photogenic things you’ll ever see in Malta! The area is suitable for scuba diving, snorkeling, and trekking.

N°6. Rotunda of Xewkija

The Rotunda of Xewkija officially called the Church of Saint John the Baptist is the largest church located in Gozo and was built in the 20th century. Fun fact: the Rotunda is built around a 17th-century church that was way too small for the town’s needs at the time. Now, the new church can welcome three times the village’s population! The old smaller church was dismantled and its sculptures were put in what is now the Sculpture Museum. In this museum, you can take an elevator to the top and enjoy spectacular panoramic views.

N° 7. Mnajdra & Ħaġar Qim

Mnajdra and Ħaġar Qim are megalithic temple complexes standing on a hilltop overlooking the sea. The main temple was built between 3600 and 3200 BC! The surrounding stark and isolated landscape is a perfect backdrop for magical photos. This area in Malta is filled with hidden gems!

N°8. Ras il-Ħamrija Tower & Natural Arch

Right next to Ħaġar Qim, you can find the Ras il-Ħamrija Tower and Natural Arch. The Tower is the last tower on the southwest coast and used to be a watch post. Right below it, you can see a natural arch that reminded me of the azure window that collapsed a few years back. Definitely a gorgeous area and a hidden gem in Malta to check out!

N°9. Ras Il-Wardija

Another hidden gem along the Dwejra coast is a man-made cave located in the limits of San Lawrenz. It used to be a Punic-Roman sanctuary, created in the third century BC then was used as a Christian temple throughout the Roman period. Now, the area is located on private property so you might need to ask for permission if you want to explore the area.

N°10. L-Imdina’s Neo-Gothic House

This Neo-Gothic building, called Casa Gourgion, designed by Maltese architect Andrea Vassallo, is located in the main square of the city of L-Imdina, near the cathedral. This eclectic architect also created the Basilica of Ta’ Pinu on Gozo which one of the other hidden gems in Malta you can check out!

N° 11. Il-Qrendi Parish Church

The Il-Qrendi Parish Church or Church of the Assumption is another Roman Catholic parish church in the form of a Latin cross (like most in Malta) but I really loved it! It is in a very non-touristy location and a lovely place to takes photos in.

N°12. Victoria Lines

Known as the Great Wall of Malta, this 12-kilometer fortification divided the North and the South of the island. Built by the British military, it used to be a protection against enemies invading from the North. You can go for a very cool walk along the fortifications and across the whole island of Malta. It is one of the most spectacular and peaceful walking paths in the country!

N°13. Għajnsielem Parish Church

The Old Parish Church is located at the heart of the village of Għajnsielem (which means “Peaceful Spring”). Għajnsielem is the first Gozitan village you see when arriving in Gozo by the sea from Malta. The view from the boat is absolutely magical! Even if the church’s creation started in 1924, it wasn’t finished until the mid-1970s because a lot of accidents happened and a few architects were needed to build the church.

N°14. Wied l-Għasri

Wied l-Għasri, or the Ghasri Valley, is a cliff-bound secluded inlet located on the north coast of Gozo. There is a tiny pebble beach at the head of the inlet where the water is crystal clear. It is a great place to snorkel or have a relaxing swim. The view of the valley from the top of the cliffs is also stunning!

N° 15. Il-Ħofra L-Kbira

Il-Ħofra L-Kbira is a hidden creek on the southeast coast of Malta not far from St Peter’s Pool. It is totally hidden and unspoiled bay, far from the main roads. Since it is pretty far from amenities, you should prepare accordingly and bring water, food, sunscreen, and good walking shoes to get there!